Package: SAVER 1.1.3

SAVER: Single-Cell RNA-Seq Gene Expression Recovery

An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) <doi:10.1038/s41592-018-0033-z> for more details.

Authors:Mo Huang [aut, cre], Nancy Zhang [aut], Mingyao Li [aut]

SAVER_1.1.3.tar.gz
SAVER_1.1.3.zip(r-4.5)SAVER_1.1.3.zip(r-4.4)SAVER_1.1.3.zip(r-4.3)
SAVER_1.1.3.tgz(r-4.4-any)SAVER_1.1.3.tgz(r-4.3-any)
SAVER_1.1.3.tar.gz(r-4.5-noble)SAVER_1.1.3.tar.gz(r-4.4-noble)
SAVER_1.1.3.tgz(r-4.4-emscripten)SAVER_1.1.3.tgz(r-4.3-emscripten)
SAVER.pdf |SAVER.html
SAVER/json (API)
NEWS

# Install 'SAVER' in R:
install.packages('SAVER', repos = c('https://mohuangx.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mohuangx/saver/issues

Datasets:

On CRAN:

8.79 score 110 stars 2 packages 185 scripts 208 downloads 40 mentions 21 exports 11 dependencies

Last updated 2 years agofrom:f7a7a111e1. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:calc.acalc.bcalc.estimatecalc.estimate.meancalc.estimate.nullcalc.kcalc.loglik.acalc.loglik.bcalc.loglik.kcalc.maxcorcalc.postcombine.savercor.cellscor.genesexpr.predictget.musample.saversaversaver.fitsaver.fit.meansaver.fit.null

Dependencies:codetoolsdoParallelforeachglmnetiteratorslatticeMatrixRcppRcppEigenshapesurvival

SAVER Tutorial

Rendered fromsaver-tutorial.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2022-06-13
Started: 2018-08-29